GgaEX0009979 @ galGal3
Exon Skipping
Gene
ENSGALG00000006998 | Q5ZKF9_CHICK
Description
NA
Coordinates
chr5:17680795-17683845:+
Coord C1 exon
chr5:17680795-17681084
Coord A exon
chr5:17683100-17683326
Coord C2 exon
chr5:17683661-17683845
Length
227 bp
Sequences
Splice sites
3' ss Seq
TTTACGCAATTGTTTTCCAGACC
3' ss Score
7.47
5' ss Seq
AGGGTAAGG
5' ss Score
9.16
Exon sequences
Seq C1 exon
GAACTAATCCATGTGCAGAGAACAACGGAGGCTGCAGCCATCTGTGTTTCTTTACACCCCAGGAGACCAGGTGTGCCTGTCCCATTGGCCTTGAGCTGTTGAGTGACATGAAGACTTGCATCATTCCTGAAGCCTTCTTAGTTTTCACAAGCAGAGCAGCAATTCATAGGATTTCCCTTGAAACCAATAATAACGATGTTGCTATTCCTCTTACTGGAGTCAAGGAGGCATCTGCTCTGGATTTTGATGTTTCTGATAACAGAATCTATTGGACTGATGTTAGTTTGAAG
Seq A exon
ACCATAAGTCGAGCTTTTATGAATGGGAGCTCTGTTGAACACGTGATTGAATTTGGGCTAGATTACCCTGAGGGAATGGCTGTAGACTGGATGGGAAAGAACCTCTACTGGGCAGATACTGGAACTAATCGAATTGAGGTAGCCCGCCTGGATGGACAGTATAGGCAGGTCCTTGTGTGGAAGGACTTGGACAACCCAAGGTCTTTGGCTCTTGATCCTACTAAAGG
Seq C2 exon
GTACATGTACTGGACAGAATGGGGAGGTAAACCTAGGATCGTTCGAGCATATATGGATGGAACAAACAGCATCACTTTGGTGGATAAAGTGGGTCGAGCCAATGACCTCACAATTGATTATGCAGACCAACGGCTGTATTGGACTGACTTAGACACCAGCATGATCGAATCGTCAAATATGCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006998-'14-11,'14-10,15-11
Average complexity
S
Mappability confidence:
75%=100=50%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF146701=FXa_inhibition=WD(100=37.1),PF0005812=Ldl_recept_b=PU(24.4=10.3)
A:
PF0005812=Ldl_recept_b=PD(70.7=38.2),PF0005812=Ldl_recept_b=WD(100=53.9),PF0005812=Ldl_recept_b=PU(0.1=0.0)
C2:
PF0005812=Ldl_recept_b=WD(100=65.1),PF0005812=Ldl_recept_b=PU(51.4=30.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGGCCTTGAGCTGTTGAGTG
R:
TGGCTCGACCCACTTTATCCA
Band lengths:
307-534
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]