GgaEX0009979 @ galGal4
Exon Skipping
Gene
ENSGALG00000006998 | LRP5
Description
low-density lipoprotein receptor-related protein 5 precursor [Source:RefSeq peptide;Acc:NP_001012915]
Coordinates
chr5:15797292-15800341:+
Coord C1 exon
chr5:15797292-15797581
Coord A exon
chr5:15799596-15799822
Coord C2 exon
chr5:15800157-15800341
Length
227 bp
Sequences
Splice sites
3' ss Seq
TTTACGCAATTGTTTTCCAGACC
3' ss Score
7.47
5' ss Seq
AGGGTAAGG
5' ss Score
9.16
Exon sequences
Seq C1 exon
GAACTAATCCATGTGCAGAGAACAACGGAGGCTGCAGCCATCTGTGTTTCTTTACACCCCAGGAGACCAGGTGTGCCTGTCCCATTGGCCTTGAGCTGTTGAGTGACATGAAGACTTGCATCATTCCTGAAGCCTTCTTAGTTTTCACAAGCAGAGCAGCAATTCATAGGATTTCCCTTGAAACCAATAATAACGATGTTGCTATTCCTCTTACTGGAGTCAAGGAGGCATCTGCTCTGGATTTTGATGTTTCTGATAACAGAATCTATTGGACTGATGTTAGTTTGAAG
Seq A exon
ACCATAAGTCGAGCTTTTATGAATGGGAGCTCTGTTGAACACGTGATTGAATTTGGGCTAGATTACCCTGAGGGAATGGCTGTAGACTGGATGGGAAAGAACCTCTACTGGGCAGATACTGGAACTAATCGAATTGAGGTAGCCCGCCTGGATGGACAGTATAGGCAGGTCCTTGTGTGGAAGGACTTGGACAACCCAAGGTCTTTGGCTCTTGATCCTACTAAAGG
Seq C2 exon
GTACATGTACTGGACAGAATGGGGAGGTAAACCTAGGATCGTTCGAGCATATATGGATGGAACAAACAGCATCACTTTGGTGGATAAAGTGGGTCGAGCCAATGACCTCACAATTGATTATGCAGACCAACGGCTGTATTGGACTGACTTAGACACCAGCATGATCGAATCGTCAAATATGCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006998_MULTIEX1-3/3=2-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF146701=FXa_inhibition=WD(100=37.1),PF0005812=Ldl_recept_b=PU(24.4=10.3)
A:
PF0005812=Ldl_recept_b=PD(70.7=38.2),PF0005812=Ldl_recept_b=WD(100=53.9),PF0005812=Ldl_recept_b=PU(0.1=0.0)
C2:
PF0005812=Ldl_recept_b=WD(100=65.1),PF0005812=Ldl_recept_b=PU(51.4=30.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGGCCTTGAGCTGTTGAGTG
R:
TGGCTCGACCCACTTTATCCA
Band lengths:
307-534
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]