BtaEX6104466 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000048098 | PKP3
Description
Bos taurus plakophilin 3 (PKP3), mRNA. [Source:RefSeq mRNA;Acc:NM_001076858]
Coordinates
chr29:51273701-51274511:-
Coord C1 exon
chr29:51274344-51274511
Coord A exon
chr29:51274079-51274264
Coord C2 exon
chr29:51273701-51273854
Length
186 bp
Sequences
Splice sites
3' ss Seq
CTCTGTGCCCTCCTGCCCAGCTG
3' ss Score
7.49
5' ss Seq
AGGGTAAGG
5' ss Score
9.16
Exon sequences
Seq C1 exon
AGTGTGGAGAACGCCGTGTGCGTGCTGAGGAACCTGTCCTACCGCCTGTACGACGAGATGCCGCCCTCGGCCCTTCAGCGGCTGGAGGGCCGGGGCCGCCAGGACATGGGGGTACCCCCAGGCGAGGCGGTGGGCTGCTTCACTCCACAGAGCCGGCGGCTCCGAGAG
Seq A exon
CTGCCCCTCACGGCCGACGCGCTCACCTTTGCCGAGGTGTCTAAGGACCCCAAGGGCCTCGAGTGGCTGTGGAGCCCCCAGATCGTGGGGCTGTACAACCGGCTGCTGCAGCGCTGTGAGCTCAACCGGCACACGACCGAGGCAGCAGCCGGGGCGCTGCAGAACATCACCGCAGGGGACCGCAGG
Seq C2 exon
TGGGCGGGGGTGCTGAGCCGGCTGGCTCTGGAGCAGGAGCGCATACTGAACCCGCTGCTGGACCGAGTTCGGACCGCTGACCACCACCAGCTGCGCTCACTGACAGGCCTCATCCGAAACCTGTCCCGAAACGCCAGGAACAAGGATGAGATGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000048098-'9-8,'9-7,10-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.286 A=0.032 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTACCGCCTGTACGACGAGAT
R:
GTTTCGGATGAGGCCTGTCAG
Band lengths:
250-436
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]