RnoEX6005507 @ rn6
Exon Skipping
Gene
ENSRNOG00000015152 | Pkp3
Description
plakophilin 3 [Source:RGD Symbol;Acc:1309133]
Coordinates
chr1:213895708-213896650:+
Coord C1 exon
chr1:213895708-213895878
Coord A exon
chr1:213895975-213896160
Coord C2 exon
chr1:213896497-213896650
Length
186 bp
Sequences
Splice sites
3' ss Seq
TCCTGTACCCTCCCACTTAGCTT
3' ss Score
5.1
5' ss Seq
AGGGTCAGT
5' ss Score
5.85
Exon sequences
Seq C1 exon
AGTGTGGAAAATGCTGTGTGTGTGCTGAGGAATTTGTCCTACCGCCTATATGATGAGATGCCACCATCAGCACTGCAGCGGCTTGAAGGCCGCGGCCGCAGGGACATGGCGGGGGCACCACCTGGTGAAGTGGTGGGCTGCTTTACACCCCAGAGTCGGCGGCTGCGAGAG
Seq A exon
CTTCCTCTCACAGCCGATGCACTCACTTTTGCTGAAGTATCTAAGGATCCCAAGGGCCTTGAGTGGCTGTGGAGCCCCCAGATCGTGGGGTTGTACAACCGACTGCTGCAGCGCTGTGAACTAAATCGGCATACGACAGAGGCGGCTGCGGGAGCGCTACAGAATATCACCGCGGGTGACCGCAGG
Seq C2 exon
TGGGCAGGTGTACTGAGCCGCCTGGCCCTGGAACAGGAACGCATCCTGAACCCCTTGCTGGACCGCGTTCGCACCGCTGACCACAACCAGCTGCGCTCACTGACTGGCCTCATCCGAAACCTGTCTCGGAATGCTCGGAACAAGGACGAGATGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015152-'10-10,'10-9,11-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.193 A=0.032 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCCTATATGATGAGATGCCACC
R:
GTTTCGGATGAGGCCAGTCAG
Band lengths:
249-435
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]