HsaEX6000056 @ hg19
Exon Skipping
Gene
ENSG00000184363 | PKP3
Description
plakophilin 3 [Source:HGNC Symbol;Acc:9025]
Coordinates
chr11:400535-403771:+
Coord C1 exon
chr11:400535-400705
Coord A exon
chr11:403078-403263
Coord C2 exon
chr11:403618-403771
Length
186 bp
Sequences
Splice sites
3' ss Seq
CTCCTCCCCGCCCTGCGCAGCTG
3' ss Score
8.77
5' ss Seq
AGGGTGGGG
5' ss Score
2.21
Exon sequences
Seq C1 exon
AGCGTGGAGAACGCGGTGTGCGTCCTGCGGAACCTGTCCTACCGCCTCTACGACGAGATGCCGCCGTCCGCGCTGCAGCGGCTGGAGGGTCGCGGCCGCAGGGACCTGGCGGGGGCGCCGCCGGGAGAGGTCGTGGGCTGCTTCACGCCGCAGAGCCGGCGGCTGCGCGAG
Seq A exon
CTGCCCCTCGCCGCCGATGCGCTCACCTTCGCGGAGGTGTCCAAGGACCCCAAGGGCCTCGAGTGGCTGTGGAGCCCCCAGATCGTGGGGCTGTACAACCGGCTGCTGCAGCGCTGCGAGCTCAACCGGCACACGACGGAGGCGGCCGCCGGGGCGCTGCAGAACATCACGGCAGGCGACCGCAGG
Seq C2 exon
TGGGCGGGGGTGCTGAGCCGCCTGGCCCTGGAGCAGGAGCGTATTCTGAACCCCCTGCTAGACCGTGTCAGGACCGCCGACCACCACCAGCTGCGCTCACTGACTGGCCTCATCCGAAACCTGTCTCGGAACGCTAGGAACAAGGACGAGATGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000184363-'7-8,'7-7,8-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.140 A=0.032 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTACCGCCTCTACGACGAGAT
R:
GTTTCGGATGAGGCCAGTCAG
Band lengths:
253-439
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)