MmuEX6015127 @ mm10
Exon Skipping
Gene
ENSMUSG00000054065 | Pkp3
Description
plakophilin 3 [Source:MGI Symbol;Acc:MGI:1891830]
Coordinates
chr7:141088481-141089398:+
Coord C1 exon
chr7:141088481-141088651
Coord A exon
chr7:141088739-141088924
Coord C2 exon
chr7:141089245-141089398
Length
186 bp
Sequences
Splice sites
3' ss Seq
CCCTGTTCCTTCCCACTCAGCTT
3' ss Score
7.3
5' ss Seq
AGGGTCAGT
5' ss Score
5.85
Exon sequences
Seq C1 exon
AGTGTGGAAAATGCTGTGTGTGTGCTGAGGAACCTGTCCTACCGCCTCTACGACGAGATGCCGCCATCAGCCTTGCAGCGGCTTGAAGGCCGGGGCCGCAGGGACATGGCAGGGGCTCCGCCTGGTGAAATGGTAGGCTGCTTCACACCTCAGAGTCGGCGGCTGCGAGAG
Seq A exon
CTTCCTCTCACAGCTGATGCACTCACCTTTGCCGAAGTATCTAAGGATCCCAAGGGCCTCGAATGGCTGTGGAGCCCCCAGATTGTGGGGTTGTACAACCGACTGCTGCAGCGCTGTGAACTAAATCGGCATACAACGGAGGCGGCCGCAGGGGCGCTACAGAATATCACCGCGGGCGACCGCAGG
Seq C2 exon
TGGGCAGGTGTGCTGAGCCGCCTGGCCCTGGAACAGGAGCGAATCCTGAACCCCTTGCTGGACCGCGTTCGCACCGCTGACCACAACCAACTGCGCTCACTGACTGGCCTCATCCGAAACCTGTCTCGGAATGCCAGGAACAAGGACGAGATGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000054065-'21-24,'21-23,24-24
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.316 A=0.032 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTACCGCCTCTACGACGAGAT
R:
GTTTCGGATGAGGCCAGTCAG
Band lengths:
253-439
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types