GgaEX6036600 @ galGal4
Exon Skipping
Gene
ENSGALG00000004260 | PKP3
Description
plakophilin 3 [Source:HGNC Symbol;Acc:HGNC:9025]
Coordinates
chr5:1562588-1563632:-
Coord C1 exon
chr5:1563465-1563632
Coord A exon
chr5:1562942-1563127
Coord C2 exon
chr5:1562588-1562741
Length
186 bp
Sequences
Splice sites
3' ss Seq
TGCTCCCCTTGTCCCCGCAGCAC
3' ss Score
11.11
5' ss Seq
AGGGTGAGG
5' ss Score
7.13
Exon sequences
Seq C1 exon
AGCGTGGAGAATGCTGTCTGTGTCCTGCGCAACCTCTCCTACCGCCTCTACGATGAAATGCCCCCCTCCTCCCTCCAACGCCTGGAGGGCCACCGTAGGAACAACGGTGGAACCATGACAGGGGAGCTGGTGGGCTGCTTCAGCCCCCAGAGCAAGAAGGCTCGAGAG
Seq A exon
CACTATCTGAATGCAGACATCGTCACTTTCACGGAGGTGTCCAAGGATCCCAAGGGCATGGAGTGGCTCTGGAACCCACAGATTGTGGGCATCTACAACCGGCTGCTGCAGCGCTGCGAGCTCAACAAGCACACCACCGAGGCGGCCTCGGGTGCCTTGCAGAACATCACTGCTGGGGATCGCAGG
Seq C2 exon
TGGGCAGGCGTGCTGAGCCGGCTGGCTTTGGAGCAGGAACGCATCCTGAACCCCGTGCTGGACCGCGTCCGCACCGCTGACCACCACCAGCTGCGCTCCCTGACAGGGCTCATCCGCAACCTGTCCCGCCATGCACGCAACAAGGACGAGATGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004260-'9-9,'9-8,10-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.304 A=0.048 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTCTACGATGAAATGCCCC
R:
GTTGCGGATGAGCCCTGTC
Band lengths:
245-431
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]