DreEX6005970 @ danRer10
Exon Skipping
Gene
ENSDARG00000079438 | PKP3 (2 of 2)
Description
plakophilin 3 [Source:HGNC Symbol;Acc:HGNC:9025]
Coordinates
chr7:32672492-32677390:-
Coord C1 exon
chr7:32677226-32677390
Coord A exon
chr7:32675361-32675540
Coord C2 exon
chr7:32672492-32672645
Length
180 bp
Sequences
Splice sites
3' ss Seq
TTCATCATGTGTTCCATCAGAGG
3' ss Score
6.96
5' ss Seq
CGGGTGAGA
5' ss Score
7.62
Exon sequences
Seq C1 exon
GGTGTAGAAAACTGTGTGTGTGTGCTGCGTAACCTGTCGTACCAGCTGTACTCTGAGATCCCGTCTTCAGTTCAGATGCGTCTAGAAGGACCCACTCGAGCACAGGACACACGGCACAGCGACGCCATCGGCTGCTTCACACCACAGAGCAAGAAAGCAAAAGAT
Seq A exon
AGGAATCAAGATCTGACCACCTTCACTGAAGTGGCTCGGGTCCCTAAAGGAGCCGAGTGGCTGTGGCATCCTCAGATTGTCAGTCTTTACAACCAAATCCTGCAAAGCTGCGAGGCAAACACAGCCACACGTGAGGCAGCGGCAGGAGCTCTGCAGAACATCACAGCGGGAGACAGTCGG
Seq C2 exon
TGGGCCTCTGTACTGAGCCGTGTGGCTCTGGAGCAGGAGCGGATGTTGCCGGTGATTCTTGACCTGTTGCGAAGCCCCACGGACGCCGAGCTGCGATCTCTAACCGGCCTTCTGAGAAACCTCTCCCGACACTGCAAAAACAAAGCCGATATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000079438-'10-11,'10-10,11-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.345 A=0.167 C2=0.000
Domain overlap (PFAM):
C1:
PF040639=DUF383=FE(18.9=100)
A:
PF040639=DUF383=FE(20.7=100)
C2:
PF040639=DUF383=FE(17.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCGTCTTCAGTTCAGATGCG
R:
TTTTTGCAGTGTCGGGAGAGG
Band lengths:
246-426
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]