BtaEX6104831 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000007244 | NID1
Description
nidogen 1 [Source:HGNC Symbol;Acc:HGNC:7821]
Coordinates
chr28:8752043-8762736:-
Coord C1 exon
chr28:8762587-8762736
Coord A exon
chr28:8761073-8761195
Coord C2 exon
chr28:8752043-8752261
Length
123 bp
Sequences
Splice sites
3' ss Seq
GCTTGGTGGCTGTCTTGCAGATG
3' ss Score
8.04
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
Exon sequences
Seq C1 exon
CTGCCGTGGGCCTGCGCCCCGTCAACCACTGCGAGACTGGCCTTCACGACTGTGACATCCCCCAGCGGGCCCGGTGCATCTACATGGGCGGCTCCTCCTACACCTGCTCCTGCCTCCCAGGCTTCTCTGGGGATGGCCGAGCCTGCCAAG
Seq A exon
ATGTGGATGAATGCCAGCCAAGCCGATGCCACCCCGATGCTTTCTGCTACAATACGCCAGGGTCCTTCACGTGCCGCTGCAAATCTGGTTACCAAGGAGACGGCTTCCATTGTGTGCCTGGAG
Seq C2 exon
TAGTGGAGAAAACCCGATGCCAGCATGAGCGGGAGCACATCCTGGGGACGGCGGACTCCTCGCGGCCCCGGCCCCCTGGACTCTTTGTCCCCGAATGTGATGAGCACGGGCAGTACGTGCCCACCCAGTGCCACAGCAGCACTGGCTACTGCTGGTGTGTGGACCGCGACGGCCGAGAGGTGCAGGGGACCAGGACTAGGTCTGGGATGAGGCCACCGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000007244-'25-25,'25-24,26-25=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.338
Domain overlap (PFAM):
C1:
PF126622=cEGF=PU(81.8=35.3)
A:
PF126622=cEGF=PD(13.6=7.1),PF129472=EGF_3=WD(100=81.0)
C2:
PF0008613=Thyroglobulin_1=WD(100=91.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCAACCACTGCGAGACTGG
R:
TACTGCCCGTGCTCATCACAT
Band lengths:
245-368
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]