HsaEX0042903 @ hg38
Exon Skipping
Gene
ENSG00000116962 | NID1
Description
nidogen 1 [Source:HGNC Symbol;Acc:HGNC:7821]
Coordinates
chr1:235993645-236013560:-
Coord C1 exon
chr1:236013411-236013560
Coord A exon
chr1:236011921-236012043
Coord C2 exon
chr1:235993645-235993872
Length
123 bp
Sequences
Splice sites
3' ss Seq
GCCTGGTGGCTGTTTTACAGATG
3' ss Score
7.39
5' ss Seq
GAGGTAAGG
5' ss Score
10.28
Exon sequences
Seq C1 exon
CTGTCGTGGACCAGCGCCCCATCAACTACTGTGAAACTGGCCTTCATAACTGCGACATACCCCAGCGGGCCCAGTGTATCTACACAGGAGGCTCCTCCTACACCTGTTCCTGCTTGCCAGGCTTTTCTGGGGATGGCCAAGCCTGCCAAG
Seq A exon
ATGTAGATGAATGCCAGCCAAGCCGATGTCACCCTGACGCCTTCTGCTACAACACTCCAGGCTCTTTCACGTGCCAGTGCAAACCTGGTTATCAGGGAGACGGCTTCCGTTGCGTGCCCGGAG
Seq C2 exon
AGGTGGAGAAAACCCGGTGCCAGCACGAGCGAGAACACATTCTCGGGGCAGCGGGGGCGACAGACCCACAGCGACCCATTCCTCCGGGGCTGTTCGTTCCTGAGTGCGATGCGCACGGGCACTACGCGCCCACCCAGTGCCACGGCAGCACCGGCTACTGCTGGTGCGTGGATCGCGACGGCCGCGAGGTGGAGGGCACCAGGACCAGGCCCGGGATGACGCCCCCGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000116962_MULTIEX1-3/3=2-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.344
Domain overlap (PFAM):
C1:
PF126622=cEGF=PU(81.8=35.3)
A:
PF126622=cEGF=PD(13.6=7.1),PF129472=EGF_3=WD(100=81.0)
C2:
PF0008613=Thyroglobulin_1=WD(100=92.2)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCCCCATCAACTACTGTGAA
R:
CATCGCACTCAGGAACGAACA
Band lengths:
247-370
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development