DreEX0050596 @ danRer10
Exon Skipping
Gene
ENSDARG00000068710 | nid1a
Description
nidogen 1a [Source:ZFIN;Acc:ZDB-GENE-050302-58]
Coordinates
chr13:49780671-49790597:-
Coord C1 exon
chr13:49790454-49790597
Coord A exon
chr13:49788806-49788925
Coord C2 exon
chr13:49780671-49780889
Length
120 bp
Sequences
Splice sites
3' ss Seq
TTTAATTGTTTTTCTTTCAGACA
3' ss Score
9.62
5' ss Seq
CAGGTACAT
5' ss Score
7.79
Exon sequences
Seq C1 exon
AAGTGCACCGTCCTGTAGACCCGTGTCGGAGCGGCACTCATGACTGTGACGTCCCAGAGCGCGCTCGCTGCAGCTACACTGGAGGATCCTCATACATCTGCACCTGTGCACCGGGATTCATGGGAGATGGCAGACGCTGTCAGG
Seq A exon
ACATCGATGAGTGTCAGGTGAACCAGTGTCATGAAAATGCTGTCTGTTTCAACACACCCGGATCTTTCTCCTGTCAGTGTAACCCTGGTTTCCATGGTGATGGTTTCTACTGCTCTACAG
Seq C2 exon
AACGTGAAAAGACGCGTTGCGAGCTGCACAAGGAAAGTGTTGTCGGGTTTGGCCCTCATAGTGCTCGTCCTCAGCCTGGTCGGTTTGTGCCCACCTGTGACGCTCAGGGCAGGTACGAGCCCATGCAGTGTCACGCCAGCATCGGCCAGTGCTGGTGTGTGGACCGTGATGGAGAGGAGATCTCTGGCACTCGCACAGGACCGGGACGCTTTCCTGTCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000068710-'15-15,'15-13,16-15
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.238
Domain overlap (PFAM):
C1:
PF126622=cEGF=PU(81.8=36.7)
A:
PF126622=cEGF=PD(13.6=7.3),PF129472=EGF_3=WD(100=82.9),PF0008613=Thyroglobulin_1=PU(3.9=7.3)
C2:
PF0008613=Thyroglobulin_1=FE(94.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCTACACTGGAGGATCCTCA
R:
ATCTCCTCTCCATCACGGTCC
Band lengths:
255-375
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]