GgaEX1039685 @ galGal4
Exon Skipping
Gene
ENSGALG00000010982 | NID1
Description
nidogen 1 [Source:HGNC Symbol;Acc:HGNC:7821]
Coordinates
chr3:37195216-37202326:+
Coord C1 exon
chr3:37195216-37195359
Coord A exon
chr3:37196098-37196220
Coord C2 exon
chr3:37202102-37202326
Length
123 bp
Sequences
Splice sites
3' ss Seq
ACTAATCTTTTGTTTTACAGATA
3' ss Score
10.01
5' ss Seq
GAGGTAAAA
5' ss Score
7.3
Exon sequences
Seq C1 exon
CTGTTGAATATGCCATAAACCACTGCCAGACAGGCACACATGGCTGCGACATCCCTCAGCGGGCTCAGTGCGTGTACACTGGTGGGTCTGCCTACATCTGCACATGCCTCCCTGGCTTCTCTGGAGATGGGCGTGCCTGTGAGG
Seq A exon
ATATAGATGAATGTCAGCAGGGCCACTGTCATCCAGATGCTTTCTGCTACAACACACCCGGATCCTTCAGCTGCCAGTGTAAGGCAGGTTATCGTGGGGATGGTTTCCAGTGTGTGTTAGGAG
Seq C2 exon
GAGTGGTAAAGACCAAATGCCAGCACGAGAAAGAAGTAGCTCTTGGAAGTGGAGGCACTTTCTTCCAAAGAGAAATAAGAGTTGGTCAGTTCATTCCCCAGTGTGATGAACATGGAAATTACGTACCCACTCAGTGCCACGGCAGCACTGGATATTGTTGGTGTGTGGATAGAGATGGAAATGAGATTGACGGCACCAGAAGTGGCCCTGGAGTTCGACCACCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010982-'25-29,'25-26,29-29
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.145
Domain overlap (PFAM):
C1:
PF126622=cEGF=PU(81.8=36.7)
A:
PF126622=cEGF=PD(13.6=7.1),PF129472=EGF_3=WD(100=83.3)
C2:
PF0008613=Thyroglobulin_1=WD(100=92.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTACATCTGCACATGCCTCCC
R:
CACTTCTGGTGCCGTCAATCT
Band lengths:
257-380
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]