DreEX0003359 @ danRer10
Exon Skipping
Gene
ENSDARG00000103129 | CU207219.1
Description
NA
Coordinates
chr11:44318367-44330282:+
Coord C1 exon
chr11:44318367-44318510
Coord A exon
chr11:44323387-44323512
Coord C2 exon
chr11:44330043-44330282
Length
126 bp
Sequences
Splice sites
3' ss Seq
GTGCGGTTCTCGTCCTGCAGATA
3' ss Score
10.02
5' ss Seq
CCGGTGGGT
5' ss Score
7.85
Exon sequences
Seq C1 exon
AAACCGAGCGTCCTGTGGATCACTGTCAGAGAGGAACACACGACTGCGACGCTCCAGAAAGAGCCAGATGCAGATACACCGGCGCCTCATCCTACATCTGCGCATGTCTGACCGGCTTCACTGGAGATGGACGAGTCTGTCAAG
Seq A exon
ATATAGACGAGTGCCAGCCTGGTCGATGCCACAGTGATGCCGTCTGCTTCAACACTCAGGGCTCCTTCAGCTGCCAGTGTCGGCCCGGGTTTACTGGAGACGGCTTCAGCTGCACTCCTGGAGCCG
Seq C2 exon
CGGTTGAGCAGACGGCGTGTGAGCGGCACAGAGAGTCCGCCCTATCCTCCTCCTCCTCCGGTGGTGGGTTCTTCCTCTTCCGCCCGCGGCCAATCGTGGGTCAGTTTGTGCCCAGCTGTGATCAGTACGGTGCGTATGAGCCCACGCAGTGCCACGCCAGTGTGGGTCAGTGCTGGTGTGTTGACAAGGCTGGACAGGAGATTCCTGGATCCAGAGCTGAAGCTGGAAGCAGACCGCTGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000103129_MULTIEX1-3/3=2-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF129472=EGF_3=WD(100=79.6),PF0764510=EGF_CA=PU(0.1=0.0)
A:
PF0764510=EGF_CA=WD(100=90.7)
C2:
PF0008613=Thyroglobulin_1=WD(100=92.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGAGAGGAACACACGACTGC
R:
GTACTGATCACAGCTGGGCAC
Band lengths:
246-372
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]