MmuEX6057309 @ mm9
Exon Skipping
Gene
ENSMUSG00000005397 | Nid1
Description
nidogen 1 [Source:MGI Symbol;Acc:MGI:97342]
Coordinates
chr13:13581273-13592053:+
Coord C1 exon
chr13:13581273-13581422
Coord A exon
chr13:13582312-13582434
Coord C2 exon
chr13:13591826-13592053
Length
123 bp
Sequences
Splice sites
3' ss Seq
GGCCTGTGGCTGTTTTGCAGACG
3' ss Score
7.33
5' ss Seq
GAGGTAAGA
5' ss Score
10.06
Exon sequences
Seq C1 exon
CTGCCGAGGACCAACGTCCCATCAACTACTGTGAAACTGGTCTCCACAACTGTGATATCCCCCAGCGAGCCCAGTGCATCTATATGGGTGGTTCCTCCTACACCTGCTCCTGTCTGCCTGGCTTCTCTGGGGATGGCAGAGCCTGCCGAG
Seq A exon
ACGTGGATGAATGCCAGCACAGCCGATGTCACCCCGATGCCTTCTGCTACAACACACCAGGCTCTTTCACATGTCAGTGCAAGCCTGGCTATCAGGGGGATGGCTTCCGATGCATGCCCGGAG
Seq C2 exon
AGGTGAGCAAAACCCGGTGTCAACTGGAACGAGAGCACATCCTTGGAGCAGCCGGCGGGGCAGATGCACAGCGGCCCACCCTGCAGGGGATGTTTGTACCTCAGTGTGATGAATATGGACACTATGTACCCACCCAGTGTCACCACAGCACTGGCTACTGCTGGTGTGTGGACCGAGATGGTCGGGAGCTGGAGGGTAGCCGTACCCCACCTGGGATGAGGCCCCCGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000005397-'11-13,'11-12,12-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.221
Domain overlap (PFAM):
C1:
PF126622=cEGF=PU(81.8=35.3)
A:
PF126622=cEGF=PD(13.6=7.1),PF129472=EGF_3=WD(100=83.3)
C2:
PF0008613=Thyroglobulin_1=WD(100=92.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACTGTGATATCCCCCAGCGA
R:
GGTGACACTGGGTGGGTACAT
Band lengths:
247-370
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: