RnoEX0059790 @ rn6
Exon Skipping
Gene
ENSRNOG00000002461 | Nid1
Description
nidogen 1 [Source:RGD Symbol;Acc:3178]
Coordinates
chr17:90567143-90576607:-
Coord C1 exon
chr17:90576458-90576607
Coord A exon
chr17:90575471-90575593
Coord C2 exon
chr17:90567143-90567370
Length
123 bp
Sequences
Splice sites
3' ss Seq
GGCCTGTGGCTGTTTTGCAGATG
3' ss Score
8.51
5' ss Seq
GAGGTAAGA
5' ss Score
10.06
Exon sequences
Seq C1 exon
CTGCTGTGGACCAACGTCCCATCAACTACTGTGAAACTGGTCTCCACAACTGTGATATCCCTCAGCGAGCCCAGTGCATCTATATGGGTGGCTCCTCCTACACCTGTTCCTGTCTGCCTGGCTTCTCTGGGGATGGCAGAGCCTGCCAAG
Seq A exon
ATGTGGATGAATGCCAGCACAGCCGATGTCACCCTGATGCCTTCTGCTACAACACACCAGGCTCCTTCAGATGTCAGTGCAAACCTGGCTATCAGGGGGATGGCTTCCGATGTGTGCCTGGAG
Seq C2 exon
AGGTGGGCAAAACCCGGTGTCAACTGGAACGAGAGCACATCCTTGGAGCAGCCGGGGCAACAGATGCACAGCGGCCCACACTGCAGGGGATGTTTGTACCCCAGTGTGATGAATATGGGCACTATACACCCACCCAGTGCCACCACAGCACTGGCTACTGCTGGTGTGTGGACCGAGATGGTCAGGAGCTAGAGGATACCCGTACTCCACCAGGGATGAGGCCCCCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000002461-'18-15,'18-13,19-15
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.221
Domain overlap (PFAM):
C1:
PF126622=cEGF=PU(81.8=35.3)
A:
PF126622=cEGF=PD(13.6=7.1),PF129472=EGF_3=WD(100=83.3)
C2:
PF0008613=Thyroglobulin_1=WD(100=92.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCCTCCTACACCTGTTCCT
R:
TCTAGCTCCTGACCATCTCGG
Band lengths:
253-376
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]