BtaEX6105372 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000033398 | HKDC1
Description
hexokinase domain containing 1 [Source:HGNC Symbol;Acc:HGNC:23302]
Coordinates
chr28:25771112-25776091:+
Coord C1 exon
chr28:25771112-25771295
Coord A exon
chr28:25774612-25774767
Coord C2 exon
chr28:25775858-25776091
Length
156 bp
Sequences
Splice sites
3' ss Seq
ATCTGTTCACCAAAATGTAGGTT
3' ss Score
4.84
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
Exon sequences
Seq C1 exon
GTACCGGCACCAACGCGTGCTACATGGAGGACATGAGCAACATCGACCTGGTGGAGGGCGACGAGGGGAGGATGTGCGTCAACACCGAGTGGGGAGCCTTCGGGGACGACGGGGCCCTGGAGGACATCCGCACCGAGTTTGACCGGGAGCTGGACCTCGGCTCTCTTAACCCCGGGAAGCAGCT
Seq A exon
GTTTGAAAAGATGATCAGCGGCCTATACTTGGGTGAACTCGTCAGGCTCATCTTGCTGAAGATGGCCAAGGCAGGCCTCCTGTTTGGCGGTGAGAAATCCTCTGCTCTTCACATTAAGGGCAAGATTGAAACACGGCATGTGGCTGCCATGGAGAG
Seq C2 exon
GTACAAAGAAGGCCTAGCCAATACGAGAGAGATTCTGACAGATTTGGGCCTGGAGCCGTCCGATGCAGACTGCATTGCGGTCCAGCACGTCTGCACCATCGTCTCCTTCCGCTCGGCCAATCTCTGCGCAGCCGCCCTGGCAGCCATCCTGACACGCCTCCGGGAGAACAAGAAGCTGGTGCGGCTCCGCACCACGGTGGGCGTGGACGGCACACTCTACAAGATTCACCCCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000033398-'7-8,'7-7,9-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.193 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0372711=Hexokinase_2=FE(25.4=100)
A:
PF0372711=Hexokinase_2=FE(21.7=100)
C2:
PF0372711=Hexokinase_2=FE(32.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGACCTCGGCTCTCTTAACC
R:
CTTGTAGAGTGTGCCGTCCAC
Band lengths:
257-413
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]