DreEX6061145 @ danRer10
Exon Skipping
Gene
ENSDARG00000038703 | hkdc1
Description
hexokinase domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-030131-9801]
Coordinates
chr13:22893161-22894834:-
Coord C1 exon
chr13:22894651-22894834
Coord A exon
chr13:22894361-22894516
Coord C2 exon
chr13:22893161-22893394
Length
156 bp
Sequences
Splice sites
3' ss Seq
CTTTCTAACTCTTGTTTCAGTTT
3' ss Score
9.4
5' ss Seq
ACAGTAAGT
5' ss Score
9.49
Exon sequences
Seq C1 exon
GTACTGGCACCAATGCGTGTTACATGGAGGAAATGCGGCACATTGACCTGGTGGAGGGAGATGAAGGAAGAATGTGTATCAATACTGAATTGGGGGCATTTGGAGATGATGGTGTTCTTGATGATTTCATTACAAGCTTTGACCGTGAAATTGATGCCGCCTCTATTAATCCAGGAAAACAGCT
Seq A exon
TTTTGAAAAGATGGTGAGTGGGATGTACATGGGAGAACTTGTGAGACTTATCCTTCTAAGAATGGCCAAGAAGGGTCTACTCTTTCGTGGCCAAATCTCGGATGCTCTTCGAACCAAGGGAACATTTCATACCAACCATATGTGCTTGATTGAACA
Seq C2 exon
GTATAAAAGCGGTTTGGAAAACACCAAGGAGATCCTGGAGGACCTAGGACTAAATCCCAGTGACGATGACTGTATTGCAGTCCAGCATGTCTGCACCATCGTGTCCTTCAGGTCAGCTAATCTGGTGGCTGCAGCTTTGGCTGCCATCCTAACACGGATCAGAGAAAACAAAAAGCTGAAGACCCTTCGGACTACTGTAGGAGTGGATGGGACGGTCTACAGAACACATCCACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000038703-'8-8,'8-7,9-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0372711=Hexokinase_2=FE(25.4=100)
A:
PF0372711=Hexokinase_2=FE(21.7=100)
C2:
PF0372711=Hexokinase_2=FE(32.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGGGCATTTGGAGATGATGG
R:
CGTGTTAGGATGGCAGCCAAA
Band lengths:
249-405
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]