MmuEX6048728 @ mm9
Exon Skipping
Gene
ENSMUSG00000020080 | Hkdc1
Description
hexokinase domain containing 1 [Source:MGI Symbol;Acc:MGI:2384910]
Coordinates
chr10:61864472-61868356:-
Coord C1 exon
chr10:61868173-61868356
Coord A exon
chr10:61866240-61866395
Coord C2 exon
chr10:61864472-61864705
Length
156 bp
Sequences
Splice sites
3' ss Seq
ACCCGTTCATCCCATCACAGGTT
3' ss Score
7.79
5' ss Seq
GATGTAAGC
5' ss Score
6.16
Exon sequences
Seq C1 exon
GAACAGGCACCAACGCGTGTTACATGGAGGACATGAGCAACATCGACCTCGTGGAAGGGGACGAGGGAAGGATGTGTATCAACACGGAGTGGGGGGCCTTTGGGGACGATGGGGCTTTGGAGGACATCCGCACCGAGTTTGACAGAGAGCTGGACCTGGGCTCGCTCAACCCCGGGAAGCAGCT
Seq A exon
GTTCGAGAAGATGATCAGCGGGCTGTACATGGGGGAGCTGGTCAGGCTTATCTTGCTGAAGATGGCCAAAGTTGGTCTCCTGTTTGGGGGTGCAAAATCCTCTGCTCTCCATACAAAGGGCAAGATCGAAACACAGCACGTGGCTGCCATGGAGAT
Seq C2 exon
GAGTAAAGAAGGCCTGGCCAACACTCGAGAGATCCTGGTGGATTTGGGCCTGGAGCCCTCTGAGTCAGACTGCATCGCTGTCCAGCACGTGTGCACCATCGTCTCTTTTCGCTCAGCCAATCTCTGCGCAGCGGCTCTGGCAACCATCCTGACTCGACTCCGAGAGAACAAGAAGCTGGCCCGGCTCCGCACCACAGTGGGCATGGATGGAACTCTCTACAAAACACACCCTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000020080-'9-9,'9-8,11-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0372711=Hexokinase_2=FE(25.4=100)
A:
PF0372711=Hexokinase_2=FE(21.7=100)
C2:
PF0372711=Hexokinase_2=FE(32.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACGCGTGTTACATGGAGGAC
R:
GACAGCGATGCAGTCTGACTC
Band lengths:
255-411
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: