RnoEX0002769 @ rn6
Exon Skipping
Gene
ENSRNOG00000049045 | AABR07045032.1
Description
NA
Coordinates
chr20:32034512-32038418:-
Coord C1 exon
chr20:32038235-32038418
Coord A exon
chr20:32035993-32036148
Coord C2 exon
chr20:32034512-32034745
Length
156 bp
Sequences
Splice sites
3' ss Seq
ACCCTCTCACCCCATCACAGGTT
3' ss Score
7.97
5' ss Seq
GATGTAAGC
5' ss Score
6.16
Exon sequences
Seq C1 exon
GAACAGGCACCAACGCGTGTTACATGGAGGACATGAGCAACATCGACCTTGTGGAAGGGGACGAGGGAAGGATGTGCATCAACACGGAGTGGGGGGCCTTCGGGGACGATGGCACTTTGGAGGACATTCGCACCGAGTTTGACAGAGAGTTGGACCTGGGCTCACTCAACCCCGGGAAGCAGCT
Seq A exon
GTTCGAGAAGATGATCAGCGGGCTGTACATGGGGGAGCTGGTCAGGCTCATCTTGCTGAAGATGGCCAAAGTTGGTCTCCTGTTTGGGGGTGCAAAGTCCTCCGCTCTCCACACAAAGGGCAAGATTGAAACACAGCACGTGGCTGCCATGGAGAT
Seq C2 exon
GAGTAAAGAAGGCCTGGCCAATACGAGAGAGATCCTGGTGGATTTGGGCCTGGACCCCTCTGAGTCAGACTGCATCGCTGTCCAGCACGTGTGCACCATCGTCTCTTTTCGCTCGGCCAATCTCTGCGCCGCTGCGCTGGCAGCCATCTTGACTCGCCTCCGAGAGAACAAGAAGCTGGCCCGGCTCCGCACCACGGTGGGCATGGATGGAACCCTCTACAAAACACACCCTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000049045-'7-7,'7-6,9-7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.165
Domain overlap (PFAM):
C1:
PF0372711=Hexokinase_2=FE(26.5=100)
A:
PF0372711=Hexokinase_2=FE(22.6=100)
C2:
PF0372711=Hexokinase_2=FE(33.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGACATTCGCACCGAGTTT
R:
GGGCCAGCTTCTTGTTCTCTC
Band lengths:
247-403
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]