GgaEX1028779 @ galGal4
Exon Skipping
Gene
ENSGALG00000021039 | HKDC1
Description
hexokinase domain containing 1 [Source:HGNC Symbol;Acc:HGNC:23302]
Coordinates
chr6:10446958-10448723:+
Coord C1 exon
chr6:10446958-10447141
Coord A exon
chr6:10447603-10447758
Coord C2 exon
chr6:10448490-10448723
Length
156 bp
Sequences
Splice sites
3' ss Seq
ATCCTTGCTCCCCATTCCAGGTT
3' ss Score
10.16
5' ss Seq
AAAGTAAGA
5' ss Score
6.91
Exon sequences
Seq C1 exon
GGACTGGCACCAACGCGTGCTACATGGAGGAGATGAGGCACATCAATTTGGTGGAAGGTGACGAAGGGAGAATGTGCATTAACACAGAGTGGGGTGCCTTTGGAGATGATGGTGCTTTGGATGACCTCCGCACAGAGTTTGATCGGGAACTCGATCTGGGGTCTCTCAATCCCGGAAAACAATT
Seq A exon
GTTTGAGAAGATGATCAGTAGCCTGTATTTGGGGGAACTTGTAAGACTCATTCTTCTCAAAATGACAAAGGAAGGTCTGCTCTTCAATGGAAAAGTGTCAGCAGCTCTGCTTACTAAGGGCAAGATTGAAATGAAACACGTGTCTGCAATGGAAAA
Seq C2 exon
ATATAAGGAAGGTCTGAGCAACACAAAGGAGATCCTTACAGAGCTGAACCTGTTTCCCTCTGAAGACGACTGCATTGCCGTTCAGCATGTCTGCACCATCGTGTCCTTCCGCTCAGCCAATCTCTGTGCTGCAGCCCTAGCAGCCATACTGACCCGACTGAGAGAGAATAAAAAACTGCTACGGCTGCGAACCACTGTTGGGATTGATGGAGGACTCTATAAAACCCACCCCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000021039-'8-8,'8-7,9-8
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0372711=Hexokinase_2=FE(25.4=100)
A:
PF0372711=Hexokinase_2=FE(21.7=100)
C2:
PF0372711=Hexokinase_2=FE(32.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACATGGAGGAGATGAGGCACA
R:
GGCAATGCAGTCGTCTTCAGA
Band lengths:
242-398
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]