GgaEX1028779 @ galGal3
Exon Skipping
Gene
ENSGALG00000021039 | E1BRU7_CHICK
Description
NA
Coordinates
chr6:11957311-11959076:+
Coord C1 exon
chr6:11957311-11957494
Coord A exon
chr6:11957956-11958111
Coord C2 exon
chr6:11958843-11959076
Length
156 bp
Sequences
Splice sites
3' ss Seq
ATCCTTGCTCCCCATTCCAGGTT
3' ss Score
10.16
5' ss Seq
AAAGTAAGA
5' ss Score
6.91
Exon sequences
Seq C1 exon
GGACTGGCACCAACGCGTGCTACATGGAGGAGATGAGGCACATCAATTTGGTGGAAGGTGACGAAGGGAGAATGTGCATTAACACAGAGTGGGGTGCCTTTGGAGATGATGGTGCTTTGGATGACCTCCGCACAGAGTTTGATCGGGAACTCGATCTGGGGTCTCTCAATCCCGGAAAACAATT
Seq A exon
GTTTGAGAAGATGATCAGTAGCCTGTATTTGGGGGAACTTGTAAGACTCATTCTTCTCAAAATGACAAAGGAAGGTCTGCTCTTCAATGGAAAAGTGTCAGCAGCTCTGCTTACTAAGGGCAAGATTGAAATGAAACACGTGTCTGCAATGGAAAA
Seq C2 exon
ATATAAGGAAGGTCTGAGCAACACAAAGGAGATCCTTACAGAGCTGAACCTGTTTCCCTCTGAAGACGACTGCATTGCCGTTCAGCATGTCTGCACCATCGTGTCCTTCCGCTCAGCCAATCTCTGTGCTGCAGCCCTAGCAGCCATACTGACCCGACTGAGAGAGAATAAAAAACTGCTACGGCTGCGAACCACTGTTGGGATTGATGGAGGACTCTATAAAACCCACCCCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000021039-'7-7,'7-6,8-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0372711=Hexokinase_2=FE(25.4=100)
A:
PF0372711=Hexokinase_2=FE(21.7=100)
C2:
PF0372711=Hexokinase_2=FE(32.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACATGGAGGAGATGAGGCACA
R:
GGCAATGCAGTCGTCTTCAGA
Band lengths:
242-398
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]