BtaEX6105417 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000011741 | COL13A1
Description
Bos taurus collagen, type XIII, alpha 1 (COL13A1), mRNA. [Source:RefSeq mRNA;Acc:NM_001105433]
Coordinates
chr28:26339127-26343331:+
Coord C1 exon
chr28:26339127-26339153
Coord A exon
chr28:26339764-26339790
Coord C2 exon
chr28:26343305-26343331
Length
27 bp
Sequences
Splice sites
3' ss Seq
ACTTGCTCTTCTCCTTCCAGGGC
3' ss Score
12.61
5' ss Seq
ATGGTAAGA
5' ss Score
9.48
Exon sequences
Seq C1 exon
GGTCCCATTGGGCTCGACGGCAAACCG
Seq A exon
GGCCGGCCGGGACCAAAGGGGGAGATG
Seq C2 exon
GGACCTCAAGGACAAAAGGGAGAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011741-'9-12,'9-11,10-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(13.3=100)
A:
PF0139113=Collagen=FE(13.6=100),PF0139113=Collagen=PU(9.9=88.9)
C2:
PF0139113=Collagen=FE(13.6=100),PF0139113=Collagen=FE(9.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]