HsaEX0016297 @ hg38
Exon Skipping
Gene
ENSG00000197467 | COL13A1
Description
collagen type XIII alpha 1 chain [Source:HGNC Symbol;Acc:HGNC:2190]
Coordinates
chr10:69888304-69894578:+
Coord C1 exon
chr10:69888304-69888330
Coord A exon
chr10:69889414-69889440
Coord C2 exon
chr10:69894552-69894578
Length
27 bp
Sequences
Splice sites
3' ss Seq
TCACCCTCTTCTCCTTCCAGGGC
3' ss Score
12.6
5' ss Seq
ATGGTAAGA
5' ss Score
9.48
Exon sequences
Seq C1 exon
GGTCCCATTGGGCTGGACGGCAAACCG
Seq A exon
GGCCACCCAGGACCAAAGGGCGACATG
Seq C2 exon
GGTCTGACGGGTCCCCCAGGACAGCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197467-'14-23,'14-20,15-23
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(13.1=100)
A:
PF0139113=Collagen=FE(13.1=100)
C2:
PF0139113=Collagen=FE(13.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development