RnoEX0022825 @ rn6
Exon Skipping
Gene
ENSRNOG00000000552 | Col13a1
Description
collagen type XIII alpha 1 chain [Source:RGD Symbol;Acc:1595704]
Coordinates
chr20:31511150-31513468:-
Coord C1 exon
chr20:31513442-31513468
Coord A exon
chr20:31512431-31512457
Coord C2 exon
chr20:31511150-31511176
Length
27 bp
Sequences
Splice sites
3' ss Seq
TGAGACCTTTTGCCTTCCAGGGC
3' ss Score
8.75
5' ss Seq
ACGGTAAGC
5' ss Score
9.89
Exon sequences
Seq C1 exon
GGTCCCATTGGTCTTGACGGCAGACCG
Seq A exon
GGCCATCCCGGACCTAAAGGGGAGACG
Seq C2 exon
GGCCTGGTGGGTCCTCGAGGACAACCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000552-'10-13,'10-12,11-13
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(13.3=100)
A:
PF0139113=Collagen=FE(13.3=100)
C2:
PF0139113=Collagen=FE(13.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]