BtaEX6106346 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000009739 | CSMD1
Description
CUB and Sushi multiple domains 1 [Source:HGNC Symbol;Acc:HGNC:14026]
Coordinates
chr27:1149519-1166899:-
Coord C1 exon
chr27:1166786-1166899
Coord A exon
chr27:1154359-1154547
Coord C2 exon
chr27:1149519-1149665
Length
189 bp
Sequences
Splice sites
3' ss Seq
CCTGGTGCTTTTCTCCTTAGCAC
3' ss Score
8.02
5' ss Seq
ATGGTAAGT
5' ss Score
11.01
Exon sequences
Seq C1 exon
GAGACTTCGTGAAGTACCAGTGCCACCCTGGGTACACGCTGTCTGGGATGGACACACTGACCTGTAAGCTCAGCTCCCAGCTACAGTTTGAAGGTTCCCTGCCGACATGTGAAG
Seq A exon
CACAATGCCCAGCCAATGAAGTCCGGACAGAATCCTCTGGCGTCATCCTCAGCCCAGGGTATCCAGGCAACTATTTTAACTCCCAGACCTGCTCCTGGAGCATCCGAGTGGAACCAAACTACAATATCACCATCTTTGTAGACACATTCCAAAGTGAAAAGCAATTTGATGCACTGGAAGTATTTGATG
Seq C2 exon
GGTCTTCTGGTCAAAGTCCTCTGTTAGTGGTCTTGAGTGGAAACCATACTGAACAATCAAATTTTACAAGCAAGAGTAATCAGTTATATCTCCGCTGGTCCACTGACCATGCAACCAGTAAAAAAGGATTCAAGATTCGTTATTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000009739-'46-46,'46-45,47-46=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008415=Sushi=PD(62.1=92.3)
A:
PF0043115=CUB=PU(56.0=95.3)
C2:
PF0043115=CUB=PD(43.1=94.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCGTGAAGTACCAGTGCCA
R:
TTTTTACTGGTTGCATGGTCAGTG
Band lengths:
234-423
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]