RnoEX0024834 @ rn6
Exon Skipping
Gene
ENSRNOG00000030719 | Csmd1
Description
CUB and Sushi multiple domains 1 [Source:RGD Symbol;Acc:1305103]
Coordinates
chr16:78749375-78759173:+
Coord C1 exon
chr16:78749375-78749488
Coord A exon
chr16:78755965-78756153
Coord C2 exon
chr16:78759027-78759173
Length
189 bp
Sequences
Splice sites
3' ss Seq
TCCATCTCTTTCCTCTTTAGCAC
3' ss Score
9.98
5' ss Seq
ATGGTAAGC
5' ss Score
9.26
Exon sequences
Seq C1 exon
GGGACTTCGTAAAGTACCAGTGCCATCCAGGGTACACGCTGTTGGGAAGTGACACCCTGACATGCAAGCTCAGCTCACAGCTATTGTTCCAAGGCTTTCCACCCACCTGTGAAG
Seq A exon
CACAATGCCCAGCCAATGAAGTGCGAACAGAGTCTTCTGGGGTGATTCTCAGTCCTGGGTACCCAGGCAACTATTTTAACTCCCAGACATGTGCTTGGAGTATTAAAGTGGAGCCAAACTTTAACATTACGCTCTTTGTGGACACCTTTCAAAGTGAAAAGCAATTTGATGCACTGGAAGTATTTGATG
Seq C2 exon
GTTCTTCTGGGCAAAGTCCTTTGTTAGTGGTCTTAAGTGGGAACCACACTGAACAGTCCAATTTTACCAGCAGAAGTAACCATCTGTACCTCCGCTGGTCCACAGATCATGCAACCAGCAAGAAAGGATTCAAGATTCGCTATGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000030719-'40-43,'40-42,41-43
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008415=Sushi=PD(62.1=92.3)
A:
PF0043115=CUB=PU(56.0=95.3)
C2:
PF0043115=CUB=PD(43.1=94.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTACCAGTGCCATCCAGGGTA
R:
AGCGAATCTTGAATCCTTTCTTGC
Band lengths:
242-431
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]