MmuEX6034699 @ mm10
Exon Skipping
Gene
ENSMUSG00000060924 | Csmd1
Description
CUB and Sushi multiple domains 1 [Source:MGI Symbol;Acc:MGI:2137383]
Coordinates
chr8:15989072-15998865:-
Coord C1 exon
chr8:15998752-15998865
Coord A exon
chr8:15992594-15992782
Coord C2 exon
chr8:15989072-15989218
Length
189 bp
Sequences
Splice sites
3' ss Seq
TCCATCTCTTTTCTCTCTAGCAC
3' ss Score
10.26
5' ss Seq
ATGGTAAGC
5' ss Score
9.26
Exon sequences
Seq C1 exon
GGGACTTCGTGAAGTACCAGTGCCATCCAGGGTACACACTGTTGGGAAGTGACACCCTGACATGCAAGCTCAGCTCACAGCTACTGTTCCAAGGCTCTCCACCCACCTGTGAAG
Seq A exon
CACAATGCCCAGCAAATGAAGTGCGAACAGAGTCTTCTGGGGTGATTCTCAGTCCCGGGTACCCAGGCAACTATTTTAACTCCCAGACATGTGCTTGGAGTATTAAAGTGGAGCCAAACTTCAACATCACACTCTTTGTGGACACATTCCAAAGTGAAAAGCAATTTGATGCACTGGAAGTGTTTGATG
Seq C2 exon
GTTCTTCTGGACAAAGTCCTCTGTTAGTGGTCTTAAGTGGGAACCACACTGAACAGTCCAATTTTACCAGCAGAAGTAACCATCTGTACCTGCGCTGGTCCACAGACCATGCAACCAGCAAGAAAGGATTCAAGATTCGCTATGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000060924-'76-83,'76-82,78-83=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.047 C2=0.000
Domain overlap (PFAM):
C1:
PF0008415=Sushi=PD(62.1=92.3)
A:
PF0043115=CUB=PU(56.0=95.3)
C2:
PF0043115=CUB=PD(43.1=94.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCGTGAAGTACCAGTGCCA
R:
TGAATCCTTTCTTGCTGGTTGC
Band lengths:
242-431
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types