GgaEX6032046 @ galGal4
Exon Skipping
Gene
ENSGALG00000016341 | CSMD1
Description
CUB and Sushi multiple domains 1 [Source:HGNC Symbol;Acc:HGNC:14026]
Coordinates
chr3:89683040-89692596:+
Coord C1 exon
chr3:89683040-89683153
Coord A exon
chr3:89687970-89688158
Coord C2 exon
chr3:89692450-89692596
Length
189 bp
Sequences
Splice sites
3' ss Seq
TCTTGTTGTGTCCTTTCTAGCAC
3' ss Score
9.96
5' ss Seq
ATGGTAAGA
5' ss Score
9.48
Exon sequences
Seq C1 exon
GAGATTTTGTCAAGTACAAATGCCATCCTGGTTTTACTCTTGTTGGACAAGATATATTAACCTGCAAACTGAATACACAATTGCAGTTTGAAGGATCTTCTCCAATTTGTGAAG
Seq A exon
CACAATGTCCAGCAAATGAAATCCGTACAGAATCATCAGGAGTAATCCTCAGTCCAGGTTACCCAGGCACATATCCCAACTCTCAGACCTGTTCTTGGACTATAAAGGTTGATCCGGGATATAACATCTCCATATTTGTAGAAATGTTTCAAAGTGAAAAGCAGTTTGATGAGCTGGAGGTATTTGATG
Seq C2 exon
GTTCTTCTGGACAGAGCCCTTTACTGGTTGCTTTAAGTGGAAATCATACTGGACAACTGAACTTTACAAGCAAAATGAATCAGCTATATCTTCGCTGGTCAACTGATCATGCAACCAGCAAGAAAGGATTCAAGATCCGTTACTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016341-'52-59,'52-58,53-59=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008415=Sushi=PD(62.1=92.3)
A:
PF0043115=CUB=PU(56.0=95.3)
C2:
PF0043115=CUB=PD(43.1=94.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGTCAAGTACAAATGCCATCCTG
R:
CTTGAATCCTTTCTTGCTGGTTGC
Band lengths:
242-431
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]