BtaEX6106347 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000009739 | CSMD1
Description
CUB and Sushi multiple domains 1 [Source:HGNC Symbol;Acc:HGNC:14026]
Coordinates
chr27:1142244-1154547:-
Coord C1 exon
chr27:1154359-1154547
Coord A exon
chr27:1149519-1149665
Coord C2 exon
chr27:1142244-1142432
Length
147 bp
Sequences
Splice sites
3' ss Seq
CTTTTTTTTGTTTCATTTAGGGT
3' ss Score
11.62
5' ss Seq
CAGGTCAGT
5' ss Score
8.94
Exon sequences
Seq C1 exon
CACAATGCCCAGCCAATGAAGTCCGGACAGAATCCTCTGGCGTCATCCTCAGCCCAGGGTATCCAGGCAACTATTTTAACTCCCAGACCTGCTCCTGGAGCATCCGAGTGGAACCAAACTACAATATCACCATCTTTGTAGACACATTCCAAAGTGAAAAGCAATTTGATGCACTGGAAGTATTTGATG
Seq A exon
GGTCTTCTGGTCAAAGTCCTCTGTTAGTGGTCTTGAGTGGAAACCATACTGAACAATCAAATTTTACAAGCAAGAGTAATCAGTTATATCTCCGCTGGTCCACTGACCATGCAACCAGTAAAAAAGGATTCAAGATTCGTTATTCAG
Seq C2 exon
CACCTTACTGCAGCTTGACCCACACTGTGAAGAATGGTGGTGTTTTAAATAGGACTGCAGGAGAAGTTGGAAGTAAAGTGCAGTATTTCTGCAAACCTGGGTATCGGATGATTGGCCATAGCAATGCCACGTGTAGACGGAATCCAGTTGGCATGTATCAGTGGGATTCCCTTGCTCCACTCTGCCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000009739-'47-47,'47-46,48-47=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0043115=CUB=PU(56.0=95.3)
A:
PF0043115=CUB=PD(43.1=94.0)
C2:
PF0008415=Sushi=WD(100=92.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAACTCCCAGACCTGCTCCTG
R:
TTCCGTCTACACGTGGCATTG
Band lengths:
255-402
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]