RnoEX6056063 @ rn6
Exon Skipping
Gene
ENSRNOG00000030719 | Csmd1
Description
CUB and Sushi multiple domains 1 [Source:RGD Symbol;Acc:1305103]
Coordinates
chr16:78755965-78762051:+
Coord C1 exon
chr16:78755965-78756153
Coord A exon
chr16:78759027-78759173
Coord C2 exon
chr16:78761863-78762051
Length
147 bp
Sequences
Splice sites
3' ss Seq
TGTTTCTCTGTTTTCTCTAGGTT
3' ss Score
12.66
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
CACAATGCCCAGCCAATGAAGTGCGAACAGAGTCTTCTGGGGTGATTCTCAGTCCTGGGTACCCAGGCAACTATTTTAACTCCCAGACATGTGCTTGGAGTATTAAAGTGGAGCCAAACTTTAACATTACGCTCTTTGTGGACACCTTTCAAAGTGAAAAGCAATTTGATGCACTGGAAGTATTTGATG
Seq A exon
GTTCTTCTGGGCAAAGTCCTTTGTTAGTGGTCTTAAGTGGGAACCACACTGAACAGTCCAATTTTACCAGCAGAAGTAACCATCTGTACCTCCGCTGGTCCACAGATCATGCAACCAGCAAGAAAGGATTCAAGATTCGCTATGCAG
Seq C2 exon
CTCCTTACTGCAGCCTCACCTCTACACTCAAGAATGGTGGCGTTTTAAATAAAACCGCAGGCGCCCTGGGGAGCAAGGTGCAGTATTTCTGCAAGCCTGGATATCGAATGATTGGCCACAGCAACGCCACCTGCAGGCGGAACCCAGTGGGCGTGTACCAGTGGGACTCGATGGCACCGCTTTGCCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000030719-'41-44,'41-43,42-44=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0043115=CUB=PU(56.0=95.3)
A:
PF0043115=CUB=PD(43.1=94.0)
C2:
PF0008415=Sushi=WD(100=92.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAATGCCCAGCCAATGAAGT
R:
GGCGCCTGCGGTTTTATTTAA
Band lengths:
253-400
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]