GgaEX6032045 @ galGal3
Exon Skipping
Gene
ENSGALG00000016341 | CSMD1
Description
NA
Coordinates
chr3:92920850-92933042:+
Coord C1 exon
chr3:92920850-92921038
Coord A exon
chr3:92925330-92925476
Coord C2 exon
chr3:92932854-92933042
Length
147 bp
Sequences
Splice sites
3' ss Seq
CATATTTTTGACCTCTGAAGGTT
3' ss Score
6.68
5' ss Seq
CAGGTAACT
5' ss Score
8.63
Exon sequences
Seq C1 exon
CACAATGTCCAGCAAATGAAATCCGTACAGAATCATCAGGAGTAATCCTCAGTCCAGGTTACCCAGGCACATATCCCAACTCTCAGACCTGTTCTTGGACTATAAAGGTTGATCCGGGATATAACATCTCCATATTTGTAGAAATGTTTCAAAGTGAAAAGCAGTTTGATGAGCTGGAGGTATTTGATG
Seq A exon
GTTCTTCTGGACAGAGCCCTTTACTGGTTGCTTTAAGTGGAAATCATACTGGACAACTGAACTTTACAAGCAAAATGAATCAGCTATATCTTCGCTGGTCAACTGATCATGCAACCAGCAAGAAAGGATTCAAGATCCGTTACTCAG
Seq C2 exon
CTCCCTATTGTAGCCTAAATCCTACATTGAGGAATGGTGGAATTGTAAATAAAACAGGTGGTCCTGCTGGAAGTAAAGTTCATTATTACTGCAAACCTGGATATAGAATGATTGGTCAGAATAATGCAACATGTAGACGTCACCAAAATGGCATGTATCAGTGGGATTCCCCTGTGCCAATCTGCCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016341-'43-44,'43-43,44-44=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.062
Domain overlap (PFAM):
C1:
PF0043115=CUB=PU(56.0=95.3)
A:
PF0043115=CUB=PD(43.1=94.0)
C2:
PF0008415=Sushi=WD(100=92.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTCTCAGACCTGTTCTTGGACT
R:
TGGTGACGTCTACATGTTGCA
Band lengths:
256-403
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]