MmuEX6034700 @ mm10
Exon Skipping
Gene
ENSMUSG00000060924 | Csmd1
Description
CUB and Sushi multiple domains 1 [Source:MGI Symbol;Acc:MGI:2137383]
Coordinates
chr8:15984696-15992782:-
Coord C1 exon
chr8:15992594-15992782
Coord A exon
chr8:15989072-15989218
Coord C2 exon
chr8:15984696-15984884
Length
147 bp
Sequences
Splice sites
3' ss Seq
TTTTCTTTTTTTTTTTTTAGGTT
3' ss Score
13.86
5' ss Seq
CAGGTGAAT
5' ss Score
6.6
Exon sequences
Seq C1 exon
CACAATGCCCAGCAAATGAAGTGCGAACAGAGTCTTCTGGGGTGATTCTCAGTCCCGGGTACCCAGGCAACTATTTTAACTCCCAGACATGTGCTTGGAGTATTAAAGTGGAGCCAAACTTCAACATCACACTCTTTGTGGACACATTCCAAAGTGAAAAGCAATTTGATGCACTGGAAGTGTTTGATG
Seq A exon
GTTCTTCTGGACAAAGTCCTCTGTTAGTGGTCTTAAGTGGGAACCACACTGAACAGTCCAATTTTACCAGCAGAAGTAACCATCTGTACCTGCGCTGGTCCACAGACCATGCAACCAGCAAGAAAGGATTCAAGATTCGCTATGCAG
Seq C2 exon
CTCCTTACTGCAGCCTCACCTCTACACTCAGGAATGGTGGCATTTTAAATAAAACCGCTGGGGCAGTTGGGAGCAAGGTACACTACTTCTGCAAGCCTGGATATCGAATGATTGGCCACAGCAATGCGACCTGCAGGCGGAACCCAGTGGGCGTGTATCAGTGGGACTCGATGGCACCACTTTGCCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000060924-'78-85,'78-83,79-85=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.047 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0043115=CUB=PU(56.0=95.3)
A:
PF0043115=CUB=PD(43.1=94.0)
C2:
PF0008415=Sushi=WD(100=92.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGATTCTCAGTCCCGGGTA
R:
CCAGGCTTGCAGAAGTAGTGT
Band lengths:
249-396
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types