BtaEX6106630 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000003572 | F11
Description
Bos taurus coagulation factor XI (F11), mRNA. [Source:RefSeq mRNA;Acc:NM_001008665]
Coordinates
chr27:15350931-15354841:+
Coord C1 exon
chr27:15350931-15351277
Coord A exon
chr27:15352135-15352190
Coord C2 exon
chr27:15354679-15354841
Length
56 bp
Sequences
Splice sites
3' ss Seq
ACATTTTTCATTTTTTGTAGGAT
3' ss Score
10.5
5' ss Seq
GTGGTAAGT
5' ss Score
10.36
Exon sequences
Seq C1 exon
CATGGACTGTAGTCTACCAGGCTCCTCTGTCCATGGGATTTTCCAGGCAAGCAAGCTTCTCTCTGGTCACTTGTTTGAATACACAGTAAAACGAGAGAGAAAAAAAAAAATCAGTGTATTGAAAAAGCAAGCACCTCTACCAGAGTACATGTTTGATATGCAAAGATTTTAAGTACTTTCACAGGCATTCTGCACAAGGAAACGATGTTACATCACACTGGGAATCAGTAAAAGTAAATATTAAAGTTAAGTGAACAGTACCTGCAAAAACTCCTTTAGAAGAGGATGGCCATTTTGGAAGACAAAAAACATTCTTATTAAGAATTGCAACAAACAAGGTTTTTCAG
Seq A exon
GATGACTTTATTATATCAAATGGTACATTTCGCTTTATTTGCCTCCGTTGCTGGTG
Seq C2 exon
AGTGTGTGACCACGCTGTTCCAAGATGCCTGCTTTAAAGGAGGAGACATCACTGTGGCTTTCGCGCCAAATGCCAAGCACTGCCAAATCATCTGCACCCACCACCCAAGGTGCTTGCTCTTCACTTTTATGACTGAATCATCATCAGAAGATCCTACCAAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003572-'0-2,'0-0,1-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0002421=PAN_1=PU(63.1=96.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTCCTTTAGAAGAGGATGGCCA
R:
GCCACAGTGATGTCTCCTCCT
Band lengths:
136-192
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]