HsaEX6087216 @ hg38
Exon Skipping
Gene
ENSG00000088926 | F11
Description
coagulation factor XI [Source:HGNC Symbol;Acc:HGNC:3529]
Coordinates
chr4:186265945-186271771:+
Coord C1 exon
chr4:186265945-186266295
Coord A exon
chr4:186267136-186267191
Coord C2 exon
chr4:186271609-186271771
Length
56 bp
Sequences
Splice sites
3' ss Seq
GCACCTTTTTCTCATTGTAGGAT
3' ss Score
10.13
5' ss Seq
GTGGTAAGT
5' ss Score
10.36
Exon sequences
Seq C1 exon
AAATGCAGCTTTGGCTAGCAGGCACACAGGCAAAATCAAGTTCTACATCTGTCCCTGTGTATGTCACTTGTTTGAATACGAAATAAAATTAAAAAAATAAATTCAGTGTATTGAGAAAGCAAGCAATTCTCTCAAGGTATATTTCTGACATACTAAGATTTTAACGACTTTCACAAATATGCTGTACTGAGAGAGAATGTTACATAACATTGAGAACTAGTACAAGTAAATATTAAAGTGAAGTGACCATTTCCTACACAAGCTCATTCAGAGGAGGATGAAGACCATTTTGGAGGAAGAAAAGCACCCTTATTAAGAATTGCAGCAAGTAAGCCAACAAGGTCTTTTCAG
Seq A exon
GATGATTTTCTTATATCAAGTGGTACATTTCATTTTATTTACTTCAGTTTCTGGTG
Seq C2 exon
AATGTGTGACTCAGTTGTTGAAGGACACCTGCTTTGAAGGAGGGGACATTACTACGGTCTTCACACCAAGCGCCAAGTACTGCCAGGTAGTCTGCACTTACCACCCAAGATGTTTACTCTTCACTTTCACGGCGGAATCACCATCTGAGGATCCCACCCGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000088926-'0-2,'0-0,1-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0002421=PAN_1=PU(63.1=96.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGCAAGTAAGCCAACAAGG
R:
GGTAAGTGCAGACTACCTGGC
Band lengths:
132-188
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains