RnoEX6055616 @ rn6
Exon Skipping
Gene
ENSRNOG00000013684 | F11
Description
coagulation factor XI [Source:RGD Symbol;Acc:1309364]
Coordinates
chr16:50181316-50189731:+
Coord C1 exon
chr16:50181316-50181384
Coord A exon
chr16:50182296-50182351
Coord C2 exon
chr16:50189569-50189731
Length
56 bp
Sequences
Splice sites
3' ss Seq
TGACATTCTTCTCTTTGTAGGAT
3' ss Score
11.12
5' ss Seq
GTGGTAAGT
5' ss Score
10.36
Exon sequences
Seq C1 exon
AACAAGACTATAGCAAAGAAAGAAAACACTCCTCCGAGGACCGCAGCAAAGGCAGAGAAAGATCTGCAG
Seq A exon
GATGACCTCATTACAGCAGGTGTTATATTTTATCTTTTTTGCCTCCGTTTCTAGTG
Seq C2 exon
AATGTATCACTAAGGTCTTCAAAGACATCAGCTTTCAAGGAGGTGACCTAAGTACTGTTTTCACACCGAGTGCCACGTACTGCCAGCTGGTCTGCACACACCACCCACGTTGCTTGCTCTTCACGTTCATGGCTGAGTCATCTTCTGACGATCCCACCAAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013684-'1-5,'1-1,2-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. ATG)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0002421=PAN_1=PU(63.1=96.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCAGCAAAGGCAGAGAAAGA
R:
AGAGCAAGCAACGTGGGTG
Band lengths:
148-204
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]