HsaEX6087216 @ hg19
Exon Skipping
Gene
ENSG00000088926 | F11
Description
coagulation factor XI [Source:HGNC Symbol;Acc:3529]
Coordinates
chr4:187187099-187192925:+
Coord C1 exon
chr4:187187099-187187449
Coord A exon
chr4:187188290-187188345
Coord C2 exon
chr4:187192763-187192925
Length
56 bp
Sequences
Splice sites
3' ss Seq
GCACCTTTTTCTCATTGTAGGAT
3' ss Score
10.13
5' ss Seq
GTGGTAAGT
5' ss Score
10.36
Exon sequences
Seq C1 exon
AAATGCAGCTTTGGCTAGCAGGCACACAGGCAAAATCAAGTTCTACATCTGTCCCTGTGTATGTCACTTGTTTGAATACGAAATAAAATTAAAAAAATAAATTCAGTGTATTGAGAAAGCAAGCAATTCTCTCAAGGTATATTTCTGACATACTAAGATTTTAACGACTTTCACAAATATGCTGTACTGAGAGAGAATGTTACATAACATTGAGAACTAGTACAAGTAAATATTAAAGTGAAGTGACCATTTCCTACACAAGCTCATTCAGAGGAGGATGAAGACCATTTTGGAGGAAGAAAAGCACCCTTATTAAGAATTGCAGCAAGTAAGCCAACAAGGTCTTTTCAG
Seq A exon
GATGATTTTCTTATATCAAGTGGTACATTTCATTTTATTTACTTCAGTTTCTGGTG
Seq C2 exon
AATGTGTGACTCAGTTGTTGAAGGACACCTGCTTTGAAGGAGGGGACATTACTACGGTCTTCACACCAAGCGCCAAGTACTGCCAGGTAGTCTGCACTTACCACCCAAGATGTTTACTCTTCACTTTCACGGCGGAATCACCATCTGAGGATCCCACCCGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000088926-'0-1,'0-0,1-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0002421=PAN_1=PU(63.1=96.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGCAAGTAAGCCAACAAGG
R:
GGTAAGTGCAGACTACCTGGC
Band lengths:
132-188
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)