MmuEX0017719 @ mm10
Exon Skipping
Gene
ENSMUSG00000031645 | F11
Description
coagulation factor XI [Source:MGI Symbol;Acc:MGI:99481]
Coordinates
chr8:45255204-45262031:-
Coord C1 exon
chr8:45261942-45262031
Coord A exon
chr8:45261026-45261081
Coord C2 exon
chr8:45255204-45255366
Length
56 bp
Sequences
Splice sites
3' ss Seq
TGACATTCTTCTCTTTGTAGGAT
3' ss Score
11.12
5' ss Seq
GTGGTAAGT
5' ss Score
10.36
Exon sequences
Seq C1 exon
ATACCGGCTCACGTAGAAAAAGGACAAGACTATAGGAAAGAAAGCAAACACTCCGCCGAGGACTACAGCAAAGACAGAAAGTATCTGCAG
Seq A exon
GATGACCTCATTACATCAGGTGTTATATTTTATCTTTTTTGCCTCAGTTTCTAGTG
Seq C2 exon
AATGCGTTACTAAGGTCTTCAAAGACATCAGCTTTCAAGGAGGTGACCTGAGTACTGTTTTCACACCGAGCGCCACATACTGCCGCTTGGTCTGCACTCACCACCCACGGTGCTTGCTCTTCACGTTCATGGCTGAGTCATCTTCGGATGATCCTACCAAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000031645_MULTIEX1-1/3=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0002421=PAN_1=PU(63.1=96.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCGAGGACTACAGCAAAGAC
R:
GGTGGTGAGTGCAGACCAAG
Band lengths:
141-197
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types