GgaEX1002975 @ galGal4
Exon Skipping
Description
NA
Coordinates
chr4:60984023-60986945:+
Coord C1 exon
chr4:60984023-60984448
Coord A exon
chr4:60984829-60984887
Coord C2 exon
chr4:60986783-60986945
Length
59 bp
Sequences
Splice sites
3' ss Seq
TGTTTTGTTTTGTTTTTTAGGAT
3' ss Score
13
5' ss Seq
GCGGTAAGT
5' ss Score
11.37
Exon sequences
Seq C1 exon
TCTGGTTTCCAGAAAACTGAAGAAGCTGTGAGCTGCATGTAACAATAAAAGAGAAACACAGTGTAGAAAGGGCTGCAGTAAAACTTGTTCTAATGGTTCTAATGCTAACAGCAGAGGCTGGCTGTTCTGCACCAGGAAGTCACCTTTTGTTGTACAAGGTTTTCAAAAGGGAAATGCTTATACAGTGTAAACCCTGCGCTTTGATTTCAGTGTGGTGCTGGCTGTATACACTCTGAAAATGCTGCCCAAGGTCAGTAACAGTGTTGACAGAATGAGCACCCCTTCAAAGTAAACATCAAAGACAAGTTAGCATTGCAGGCACAGTAATATTTAACACAAACAGTTAACAATATGTTTTTTTTTCTTTTTTTTTTTCTAAGAGGAACTTAAACTTTATCCACTCGCACAGACCTGCTGTATGTTCAG
Seq A exon
GATGATTTGGATTTATCAGACTTTTTATTTCATTTTCTTATTTGCTTCAGTTTACAGCG
Seq C2 exon
AATGTGTGACGCAGATCTATGAAAATACTTACTTTCAAGGAGGAGACCTCACTACGGTTTTCACACCAAGTGCCAATTACTGTCAAATAGTTTGTACTTACCATCCTACCTGCCTGTTCTTCACATATTTGCCAGTGACATGGACTAAAGATCCTGCACAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013571-'0-1,'0-0,1-1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0002421=PAN_1=PU(63.1=96.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TATCCACTCGCACAGACCTGC
R:
CAGGCAGGTAGGATGGTAAGT
Band lengths:
148-207
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]