BtaEX6107180 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000003275 | ANK1
Description
ankyrin 1, erythrocytic [Source:HGNC Symbol;Acc:HGNC:492]
Coordinates
chr27:36296674-36298378:-
Coord C1 exon
chr27:36298281-36298378
Coord A exon
chr27:36297971-36298195
Coord C2 exon
chr27:36296674-36296828
Length
225 bp
Sequences
Splice sites
3' ss Seq
ACGGACCCGCTGTGCCCTAGGTT
3' ss Score
6.34
5' ss Seq
GAGGTGAGA
5' ss Score
7.66
Exon sequences
Seq C1 exon
GTGTCCAAAGAGTATGATGAAGACTCTCTGATCCCCAGCAGCCCGGCCACAGAGACCTCGGACAACATCAGCCCTGTAGCCAGCCCGGTGCACACGGG
Seq A exon
GTTCCTGGTGAGCTTCATGGTGGACGCCCGCGGGGGCTCCATGCGGGGCAGCCGGCACAACGGCCTGAGGGTGGTGGTCCCGCCGCGGACGTGCGCAGCGCCCACCCGCATCACCTGCCGCCTGGTGAAGCCCCAGAAGCTGCCCACGCCGCCGCCGCTGGCCGAGGAGGAGGGCCTGGCCAGCAGGGTCATCGCGCTGGGGCCCACGGGGGTCCAGTTTCTGAG
Seq C2 exon
CCCTGTCATCGTGGAGATCCCCCACTTCGCCTCCCAAGGCCGTGGGGACCGTGAGCTCGTGGTGCTGCGGAGTGAAAACGGCTCCGTGTGGAAGGAACACAAGAACCGCTATGGAGAGAGCTACCTGGACCAGATCCTCAATGGGATGGACGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003275-'26-32,'26-31,27-32=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.788 A=0.355 C2=0.000
Domain overlap (PFAM):
C1:
PF0079115=ZU5=PU(1.0=3.0)
A:
PF0079115=ZU5=FE(71.4=100)
C2:
PF0079115=ZU5=PD(26.7=52.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTCCAAAGAGTATGATGAAGACT
R:
CTTCGTCCATCCCATTGAGGA
Band lengths:
253-478
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]