DreEX0000378 @ danRer10
Exon Skipping
Gene
ENSDARG00000059093 | ANK1 (1 of 2)
Description
ankyrin 1, erythrocytic [Source:HGNC Symbol;Acc:HGNC:492]
Coordinates
chr5:68200981-68270435:-
Coord C1 exon
chr5:68270340-68270435
Coord A exon
chr5:68211518-68211742
Coord C2 exon
chr5:68200981-68201185
Length
225 bp
Sequences
Splice sites
3' ss Seq
ACATCTTGATGGTTGTGCAGTTT
3' ss Score
3.42
5' ss Seq
AGGGTGAGT
5' ss Score
9.25
Exon sequences
Seq C1 exon
AGATAGAGTAACACTGGAAAACACTGAGGTAGAAATAGAGAGAAAGAAAGAGAGAGAGGCTGAGCCGGGATGCCAACCAACACCATCCTTTTTGGA
Seq A exon
TTTTCTGGTGAGCTTCATGGTGGATGCTCGCGGCGGCTCGATGCGCGGCAGCAGACACAACGGCCTCCGCGTCATCATTCCTCCTCGAACCTGCGCCGCTCCCACACGCATCACCTGCCGCCTGGTGAAGCCCCAGAAGCTGCCCACACCGCCGCCATTAGTGGAGGGAGAGGGTCTCGCCAGCCGCATCATCTCCCTTGGACCCGCCAGCATGCAGTTTTTAGG
Seq C2 exon
GCCCAGCCGGTGCCTGATGAGCTGGTGGCCAAGCTTTTGGGGAACCAGGCCACGTTCAGTCCTGTGGTGACGGTGGAGCCTCGGCGCCGGAAGTTTCACCGTCCCATCGGCCTAAGAATCCCACTGCCACCCTCATGGAGAGAGAGCCCGCGGGACGCCGGAGAGGGAGACACCACCAGCCTGCGCCTGCTCTGCAGCGTCATCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000059093_MULTIEX2-26/28=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.224 C2=0.116
Domain overlap (PFAM):
C1:
PF127962=Ank_2=PU(5.6=44.4)
A:
PF0079115=ZU5=FE(71.4=100)
C2:
NO
Main Skipping Isoform:
ENSDART00000161561fB27
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
AACACTGGAAAACACTGAGGT
R:
CGATGACGCTGCAGAGCA
Band lengths:
292-517
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]