GgaEX1065915 @ galGal3
Exon Skipping
Gene
ENSGALG00000003594 | Q90715_CHICK
Description
NA
Coordinates
chr22:2672279-2673015:-
Coord C1 exon
chr22:2672927-2673015
Coord A exon
chr22:2672623-2672847
Coord C2 exon
chr22:2672279-2672433
Length
225 bp
Sequences
Splice sites
3' ss Seq
TATGCCTCTACCCACTGCAGGTT
3' ss Score
8.52
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
GAGTTCGATGAGGACTCCTTGATTCCCAGCAGCCCGGCCACCGAAACCTCGGACAACATCAGCCCCGTGGCCAGCCCCGTTCACACAGG
Seq A exon
GTTCCTGGTGAGCTTCATGGTGGATGCGCGTGGCGGCTCCATGCGGGGCAGCCGGCACCACGGGCTGCGCGTGGTCATCCCTCCCCGTGCCTGTGCTGCACCCACCCGCATCACTTGCCGCCTGGTGAAGCCTCAGAAGCTGCCTGCCCCCCCACCGCTGGCTGAGGAGGAGGGCCTGGCAAGCCGCATCATTGCACTGGGGCCCGCTGGCGCCCAGTTCCTCAG
Seq C2 exon
CCCCGTCATTGTGGAGATTCCTCACTTTGCCTCCTATGGACGTGGGGACCGTGAGCTGGTGGTGTTGCGCAGTGAGAATGGCTCTGTCTGGAAGGAGCACCGCAACCGCTACGAGGAGAGCTACATGGACCAACTGCTCAGTGGCATGGATGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003594-'29-28,'29-26,30-28=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.800 A=0.145 C2=0.075
Domain overlap (PFAM):
C1:
PF0079115=ZU5=PU(1.0=3.3)
A:
PF0079115=ZU5=FE(71.4=100)
C2:
PF0079115=ZU5=PD(26.7=52.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GAGTTCGATGAGGACTCCTTGA
R:
CCTCATCCATGCCACTGAGC
Band lengths:
244-469
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]