GgaEX1065915 @ galGal4
Exon Skipping
Gene
ENSGALG00000003594 | chAnk1
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NJR5]
Coordinates
chr22:2619757-2622755:-
Coord C1 exon
chr22:2622658-2622755
Coord A exon
chr22:2622354-2622578
Coord C2 exon
chr22:2619757-2619831
Length
225 bp
Sequences
Splice sites
3' ss Seq
TATGCCTCTACCCACTGCAGGTT
3' ss Score
8.52
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
CCCTCCAAGGAGTTCGATGAGGACTCCTTGATTCCCAGCAGCCCGGCCACCGAAACCTCGGACAACATCAGCCCCGTGGCCAGCCCCGTTCACACAGG
Seq A exon
GTTCCTGGTGAGCTTCATGGTGGATGCGCGTGGCGGCTCCATGCGGGGCAGCCGGCACCACGGGCTGCGCGTGGTCATCCCTCCCCGTGCCTGTGCTGCACCCACCCGCATCACTTGCCGCCTGGTGAAGCCTCAGAAGCTGCCTGCCCCCCCACCGCTGGCTGAGGAGGAGGGCCTGGCAAGCCGCATCATTGCACTGGGGCCCGCTGGCGCCCAGTTCCTCAG
Seq C2 exon
GCTCTCTGAGCAGCACCGACAGGGCAGACCAGAAGATGATCGACATTGCAGAGCAGCTTGGCCTCAGCTGGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003594_MULTIEX2-6/14=5-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.818 A=0.184 C2=0.139
Domain overlap (PFAM):
C1:
PF0079115=ZU5=PU(1.0=3.0)
A:
PF0079115=ZU5=FE(71.4=100)
C2:
PF0053117=Death=PU(19.0=44.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCCAAGGAGTTCGATGAGG
R:
CTGCCCAGCTGAGGCCAA
Band lengths:
172-397
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]