RnoEX6055943 @ rn6
Exon Skipping
Gene
ENSRNOG00000018241 | Ank1
Description
ankyrin 1 [Source:RGD Symbol;Acc:1309620]
Coordinates
chr16:73770491-73771616:-
Coord C1 exon
chr16:73771519-73771616
Coord A exon
chr16:73771211-73771435
Coord C2 exon
chr16:73770491-73770645
Length
225 bp
Sequences
Splice sites
3' ss Seq
CGATCTCCCTGTGCTTCTAGGTT
3' ss Score
9.77
5' ss Seq
TAGGTGAGA
5' ss Score
6.95
Exon sequences
Seq C1 exon
GCATCTAAAGAGTATGATGAGGACTCACTCATTCCCAGTAGCCCAGCCACAGAGACCTCAGACAACATCAGCCCCGTGGCTAGCCCCGTCCACACAGG
Seq A exon
GTTTCTGGTGAGCTTCATGGTCGATGCCCGGGGAGGATCCATGAGAGGAAGTCGTCATAATGGCCTAAGGGTGGTGATCCCTCCCCGGACATGCGCAGCACCCACTCGCATCACCTGCCGCCTGGTTAAGCCCCAGAAGCTAAGCACACCGCCCCCGCTGGCTGAGGAGGAGGGCCTAGCCAGCAGGATCATTGCACTGGGTCCTACGGGGGCCCAGTTCCTTAG
Seq C2 exon
CCCTGTGATCGTGGAAATCCCCCACTTTGCCTCCCATGGCCGCGGGGACCGTGAGCTGGTGGTTCTGAGGAGCGAGAACGGCTCCGTGTGGAAGGAGCACAAGAGCCGCTATGGAGAAAGCTACCTGGACCAGATCCTGAACGGCATGGACGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018241-'37-37,'37-36,38-37=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.758 A=0.184 C2=0.000
Domain overlap (PFAM):
C1:
PF0079115=ZU5=PU(1.0=3.0)
A:
PF0079115=ZU5=FE(71.4=100)
C2:
PF0079115=ZU5=PD(26.7=52.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GCATCTAAAGAGTATGATGAGGACT
R:
TTCGTCCATGCCGTTCAGGAT
Band lengths:
252-477
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]