BtaEX6107471 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000016594 | PIGQ
Description
phosphatidylinositol glycan anchor biosynthesis, class Q [Source:HGNC Symbol;Acc:HGNC:14135]
Coordinates
chr25:507250-508602:+
Coord C1 exon
chr25:507250-507361
Coord A exon
chr25:507927-508007
Coord C2 exon
chr25:508488-508602
Length
81 bp
Sequences
Splice sites
3' ss Seq
GGCATCCTTTCTCCTCGTAGCTG
3' ss Score
7.96
5' ss Seq
CTGGTGAGC
5' ss Score
8.05
Exon sequences
Seq C1 exon
GCTCTACTGCCTGAAGATCCACGGCCTGTCCTCGCTGTGGCGCCTGTTCCGAGGGAAGAAGTGGAACGTCCTGCGCCAGCGCGTGGACTCCTGCTCCTACGACCTGGACCAG
Seq A exon
CTGTTCATCGGGACCTTGCTCTTCACCATCCTGATTTTCCTGCTTCCTACCACGGCCCTGTACTACCTGGTGTTCACCCTG
Seq C2 exon
CTCCGGCTCCTAGTGGTCACCGTGCAGGGCCTGGTCCATCTGCTCGTGGACCTCATCAACTCGCTGCCGCTGTACTCGCTTGGCCTCCGGCTGTGCCGGCCCTACAGGCTTGCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016594-'15-16,'15-15,20-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.109 C2=0.321
Domain overlap (PFAM):
C1:
PF0502410=Gpi1=FE(23.6=100)
A:
PF0502410=Gpi1=PD(10.8=63.0)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTACTGCCTGAAGATCCACGG
R:
GTTGATGAGGTCCACGAGCAG
Band lengths:
169-250
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]