GgaEX1043739 @ galGal4
Exon Skipping
Gene
ENSGALG00000001985 | PIGQ
Description
phosphatidylinositol glycan anchor biosynthesis, class Q [Source:HGNC Symbol;Acc:HGNC:14135]
Coordinates
chr14:13511557-13521729:+
Coord C1 exon
chr14:13511557-13511710
Coord A exon
chr14:13516492-13516572
Coord C2 exon
chr14:13521668-13521729
Length
81 bp
Sequences
Splice sites
3' ss Seq
TTGTTTCTTTTTCCCCCCAGTTA
3' ss Score
10.72
5' ss Seq
CTGGTAAGA
5' ss Score
9.45
Exon sequences
Seq C1 exon
GCTACATTCACCTGATGTCCCCATTCATCGAGATGATCCTCTGGTATGTTGGTCTGTCAGCTTGCCTGGGTCTGACCGTGGCCCTCTGCATCCTCTCTGACATCATTGCCCTTCTGACCTTCCACATCTACTGCTTCTATGTCTATGGAGCGAG
Seq A exon
TTATTTATTGGCACGCTGCTATTTACCATCCTGCTGTTCCTTCTGCCTACAACTGCACTGTACTACTTGGTGTTTACCCTG
Seq C2 exon
CTGGTGTGAAGTTCAGAGTCCTCGAGCAGCAGGATGGAAAACCTCTTCGACTCCTTATGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001985_MULTIEX1-2/3=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0502410=Gpi1=FE(26.8=100)
A:
PF0502410=Gpi1=PD(8.9=63.0)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACCTGATGTCCCCATTCATCG
R:
CTGCTGCTCGAGGACTCTGAA
Band lengths:
178-259
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]