GgaEX1043739 @ galGal3
Exon Skipping
Gene
ENSGALG00000001985 | PIGQ
Description
NA
Coordinates
chr14:14278660-14281636:+
Coord C1 exon
chr14:14278660-14278771
Coord A exon
chr14:14280475-14280555
Coord C2 exon
chr14:14281522-14281636
Length
81 bp
Sequences
Splice sites
3' ss Seq
TTGTTTCTTTTTCCCCCCAGTTA
3' ss Score
10.72
5' ss Seq
CTGGTAAGA
5' ss Score
9.45
Exon sequences
Seq C1 exon
GCTCTACTGCCTGAAGATCTATGGCCTGTCGTCTCTCTGGCGCTTGTTCCGTGGGAAGAAGTGGAACGTCCTCCGGCAGCGGGTGGATTCCTGCTCTTATGACTTAGACCAG
Seq A exon
TTATTTATTGGCACGCTGCTATTTACCATCCTGCTGTTCCTTCTGCCTACAACTGCACTGTACTACTTGGTGTTTACCCTG
Seq C2 exon
CTCCGTTTGCTGGTGGTGATTGTGCAAGGCCTGATCCACTTGCTGGTTGACCTGATTGACTCTCTGCCCCTTTATTCAATCATCCTTCGGTTCTGCAGATCCTACAGGCTGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001985-'7-7,'7-6,8-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0502410=Gpi1=FE(19.5=100)
A:
PF0502410=Gpi1=PD(8.9=63.0)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGGAAGAAGTGGAACGTCCT
R:
CCAGCCTGTAGGATCTGCAGA
Band lengths:
173-254
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]