RnoEX0065868 @ rn6
Exon Skipping
Gene
ENSRNOG00000020140 | Pigq
Description
phosphatidylinositol glycan anchor biosynthesis, class Q [Source:RGD Symbol;Acc:1359535]
Coordinates
chr10:15293232-15294224:-
Coord C1 exon
chr10:15294113-15294224
Coord A exon
chr10:15293656-15293736
Coord C2 exon
chr10:15293232-15293346
Length
81 bp
Sequences
Splice sites
3' ss Seq
CCGGTCCTTTTTCCCTACAGCTG
3' ss Score
11.82
5' ss Seq
CTGGTGAGC
5' ss Score
8.05
Exon sequences
Seq C1 exon
GCTGTACTGCCTGAAGATCTATGGCCTCTCCTCGCTCTGGCGTCTCTTCCGGGGAAAGAAGTGGAATGTTCTGCGCCAGCGGGTGGATTCTTGTTCCTATGACCTTGACCAG
Seq A exon
CTGTTCATCGGGACCTTGCTCTTCACCATCTTGGTCTTCTTGCTGCCCACCACCGCTCTGTACTACCTGGTATTCACCCTG
Seq C2 exon
CTCCGGCTCCTGGTGATCACTGTGCAGGGCTTAATCCATCTACTTGTAGACCTCATCAATTCCCTCCCACTGTACTCCCTTGGCCTTCGACTCTGCCGACCCTACAGGCTGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000020140-'20-14,'20-12,24-14
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0502410=Gpi1=FE(19.5=100)
A:
PF0502410=Gpi1=PD(8.9=63.0)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCTATGGCCTCTCCTCGCTC
R:
GGGAGTACAGTGGGAGGGAAT
Band lengths:
175-256
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]