HsaEX0047458 @ hg19
Exon Skipping
Gene
ENSG00000007541 | PIGQ
Description
phosphatidylinositol glycan anchor biosynthesis, class Q [Source:HGNC Symbol;Acc:14135]
Coordinates
chr16:629069-630972:+
Coord C1 exon
chr16:629069-629180
Coord A exon
chr16:630183-630263
Coord C2 exon
chr16:630858-630972
Length
81 bp
Sequences
Splice sites
3' ss Seq
GTGCTGGCCCCTCCCTACAGCTG
3' ss Score
10.26
5' ss Seq
CTGGTGAGC
5' ss Score
8.05
Exon sequences
Seq C1 exon
GCTGTACTGCCTGAAGATCCATGGCCTGTCCTCACTGTGGCGTCTGTTCCGGGGGAAGAAGTGGAACGTTCTGCGCCAGCGCGTGGACTCCTGTTCCTATGACCTGGACCAG
Seq A exon
CTGTTCATCGGGACTCTGCTCTTCACCATCCTGCTCTTCCTCCTGCCTACCACAGCCCTGTACTACCTGGTGTTCACCCTG
Seq C2 exon
CTCCGGCTCCTGGTGGTCGCCGTGCAGGGCCTGATCCATCTGCTCGTGGACCTCATCAACTCCCTGCCGCTGTACTCACTGGGTCTTCGGCTCTGCCGGCCCTACAGGCTGGCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000007541_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0502410=Gpi1=FE(19.5=100)
A:
PF0502410=Gpi1=PD(12.8=64.3)
C2:
PF0502410=Gpi1=PD(35.4=43.6)
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAAGATCCATGGCCTGTCCT
R:
GCAGGGAGTTGATGAGGTCCA
Band lengths:
168-249
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)