MmuEX0035084 @ mm9
Exon Skipping
Gene
ENSMUSG00000025728 | Pigq
Description
phosphatidylinositol glycan anchor biosynthesis, class Q [Source:MGI Symbol;Acc:MGI:1333114]
Coordinates
chr17:26067466-26068518:-
Coord C1 exon
chr17:26068407-26068518
Coord A exon
chr17:26067903-26067983
Coord C2 exon
chr17:26067466-26067580
Length
81 bp
Sequences
Splice sites
3' ss Seq
CTGGTCCTTTTTCCCTGCAGCTC
3' ss Score
11.99
5' ss Seq
CTGGTGAGC
5' ss Score
8.05
Exon sequences
Seq C1 exon
GCTGTACTGCCTGAAGATCTATGGCCTTTCCTCTCTCTGGCGTCTGTTCCGGGGGAAGAAGTGGAATGTTCTGCGCCAGCGAGTGGATTCTTGTTCCTATGACCTTGACCAG
Seq A exon
CTCTTCATTGGGACCTTGCTCTTCACCATCCTGGTCTTCTTGCTACCCACCACCGCTCTGTACTACCTGGTATTCACCCTG
Seq C2 exon
CTCCGGCTCCTGGTGATCACTGTGCAAGGCTTAATCCATCTACTTGTAGACCTCATCAATTCCCTGCCACTATACTCCCTTGGCCTTCGACTCTGCCGACCCTACAGGCTGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000025728-'22-31,'22-29,24-31=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0502410=Gpi1=FE(19.5=100)
A:
PF0502410=Gpi1=PD(10.8=63.0)
C2:
PF0502410=Gpi1=PD(44.0=84.6)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCCTCTCTCTGGCGTCTGTT
R:
GAGTCGAAGGCCAAGGGAGTA
Band lengths:
178-259
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: