BtaEX6108230 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000026403 | CREBBP
Description
Bos taurus CREB binding protein (CREBBP), mRNA. [Source:RefSeq mRNA;Acc:NM_001164022]
Coordinates
chr25:3090001-3099417:-
Coord C1 exon
chr25:3099177-3099417
Coord A exon
chr25:3097778-3097891
Coord C2 exon
chr25:3090001-3090243
Length
114 bp
Sequences
Splice sites
3' ss Seq
CGTTGTTTTTCTGGTCATAGTTG
3' ss Score
6.1
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
Exon sequences
Seq C1 exon
CCTCAGATGCAAACATCAGTGGGAATTGTACCCACCCAGGCGATTGCAACGGGCCCCACCGCAGATCCCGAAAAACGCAAACTGATACAGCAGCAGCTGGTCCTACTGCTTCACGCTCATAAATGCCAGAGGCGAGAACAAGCCAATGGAGAGGTCCGGGCCTGCGCACTCCCACATTGTCGGACCATGAAAAACGTCTTGAATCACATGACGCATTGTCAGGCTGGGAAGGCTTGTCAAG
Seq A exon
TTGCCCATTGCGCATCTTCACGACAAATCATCTCTCATTGGAAGAACTGCACACGGCATGACTGTCCTGTTTGCCTCCCTTTGAAAAATGCCAGTGACAAGCGAAACCAACAAA
Seq C2 exon
CCATCCTGGGGTCTCCAGCTGGTGGAATTCAAAACACCATTGGTTCTGTTGGCACAGGCCAACAGAATGCCACTTCTTTAAGTAACCCAAATCCGATAGACCCCAGCTCCATGCAACGAGCGTATGCTGCTCTTGGACTCCCCTACCTGAACCAGCCCCAGACGCAGCTGCAGCCTCAGGTTCCTGGCCAGCAACCAGCACAGCCTCAAACTCACCAGCAGATGAGGAGTCTCAACCCCCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000026403-'3-4,'3-3,4-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.333 A=0.179 C2=0.927
Domain overlap (PFAM):
C1:
PF0213511=zf-TAZ=PU(66.7=66.7)
A:
PF0213511=zf-TAZ=PD(32.1=66.7)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGAGAACAAGCCAATGGAGA
R:
GGAGTCCAAGAGCAGCATACG
Band lengths:
251-365
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]